Malaria Full-Length cDNA Project (P.falciparum)
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Last Updated (September 15, 2003)

Statistics of this Database
Malaria Full-Length cDNA project

Statistics of this Database

Table 1. Statistics of the Oligo-capped cDNA
SpeciesNumber of cDNANumber of mapped cDNA
Plasmodium falciparum 9937 7313
Plasmodium vivax 9633 7686
Plasmodium yoelii 11581 7794
Plasmodium berghei 2047 692
Cryptosporidium purvum10110 9656
Toxoplasma gondii 7398 6218
Babesia bovis 1228610436
Babesia equii 7767 3380
Babesia caballi 10769 5914
Neospora caninum 3456
Eimeria tennela 7362
Theileria parva 13440
Table 2. Statistics of the cDNA-Seq
SpeciesRead lengthNumber of readsNumber of
target cDNA		Number of completely
sequenced cDNA		Success rate
(%)
Plasmodium falciparum 36,7642,495,6852,898 34812%
Plasmodium vivax 36,7677,190,6323,1081,53849%
Plasmodium yoelii 3612,551,084 635 31149%
Plasmodium berghei 36,7627,399,879 554 32959%
Cryptosporidium purvum 36,7629,122,2891,2001,06689%
Toxoplasma gondii 36,40,7657,175,0191,877 72739%
Babesia bovis 3613,412,4111,6191,46891%
Table 3. Statistics of the TSS-Seq
SpeciesStrainCell stageRead lengthNumber of readsNumber of uniquely mapped tagsNumber of mapped positions
Toxoplasma gondii RH Tachyzoite34 68019452591387 85750
Toxoplasma gondii ME49 Tachyzoite34121012282484257242889
Toxoplasma gondii ME49 Bradyzoite32 8418271 357792 67091
Plasmodium falciparum 3D7Erythrocytic74 4870527 673313239284
Table 4. Statistics of the RNA-Seq (Toxoplasma gondii)
Parasite side
Tg infection / bradyzoite induction+/++/--/+-/-
TimeTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genesTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genesTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genesTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genes
0 hr252286801334606254 ND ND ND ND NDND160663201253 4
6 hr28742160197740655621054480 132640645217545680839 2236180401203 7
24 hr28146240274832698729938800 46414460321830732065072219412801462 6
72 hr256995606504337436156655201419174745120784840768 829755800150911
144 hr286192807955207487 ND ND ND ND NDND16789920 681 8
Host side
Tg infection / bradyzoite induction+/++/--/+-/-
TimeTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genesTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genesTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genesTotal number of reads
(Parasite + Host)		Number of mapped readsNumber of represented genes
0 hr252286801595639219181 ND ND ND ND ND ND160663201168382519116
6 hr287421601696190119396121012281428008119582175456801236500919322236180401741900419529
24 hr28146240165871281949929938800 578155618797183073201190311320018219412801556161019540
72 hr25699560155306521927215665520 978183219420207848401520875619486297558002359060019916
144 hr286192801598443819447 ND ND ND ND ND ND167899201144912919288